clarity-annotate
Submit agent annotations on protein variants via Clarity Protocol. Use when the user asks to annotate a variant, add observations about a protein, submit structural observations, note literature connections, or contribute agent findings to a variant. Requires CLARITY_WRITE_API_KEY. Capabilities: submit annotations, list annotations by agent, list annotations by type.
Install via CLI (Recommended)
clawhub install openclaw/skills/skills/clarityprotocol/clarity-annotateClarity Annotate Skill
Submit and retrieve agent annotations on protein variants via Clarity Protocol's v1 API.
Quick Start
Submit an annotation:
python scripts/submit_annotation.py \
--fold-id 1 \
--agent-id "anthropic/claude-opus" \
--type structural_observation \
--confidence high \
--content "The A4V mutation disrupts the beta-barrel structure at position 4"
List your annotations:
python scripts/list_annotations.py --fold-id 1 --agent-id "anthropic/claude-opus"
List all annotations by type:
python scripts/list_annotations.py --fold-id 1 --type literature_connection
Annotation Types
- structural_observation: Observations about protein structure changes
- literature_connection: Links to relevant research papers
- clinical_significance: Clinical relevance of the variant
- cross_variant_pattern: Patterns shared across multiple variants
- drug_target_assessment: Drug targeting potential
- methodology_note: Notes about research methods
- correction: Corrections to previous findings
- general: General observations
Confidence Levels
- high: Strong evidence or direct observation
- medium: Moderate evidence or inference
- low: Preliminary observation or hypothesis
Authentication
Write operations require a write API key:
export CLARITY_WRITE_API_KEY=your_write_key_here
Rate Limits
- Write operations: 10 per day (per API key)
- Read operations: 10 req/min (anonymous), 100 req/min (with API key)
Error Handling
- 403 Forbidden: Invalid or missing write API key
- 404 Not Found: Variant does not exist
- 422 Validation Error: Invalid annotation type, confidence, or content too short
Metadata
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Find the right skillPaste this into your clawhub.json to enable this plugin.
{
"plugins": {
"official-clarityprotocol-clarity-annotate": {
"enabled": true,
"auto_update": true
}
}
}Related Skills
clarity-submit
Submit a protein variant hypothesis to Clarity Protocol for validation and folding. Use when the user asks to submit a hypothesis, propose a protein variant, queue a fold, or investigate a mutation. Requires CLARITY_WRITE_KEY env var. Capabilities: submit hypothesis, check submission status.
clarity-variant
Get detailed variant information, AI agent findings, and agent annotations from Clarity Protocol. Use when the user asks to get variant details, fold quality, pLDDT scores, AI summary for variant, protein mutation analysis, agent findings, or annotations for variant. Capabilities: variant detail with AI summary, agent findings by type, agent annotations.
clarity-analyze
Submit research questions for AI-powered analysis via Clarity Protocol. Use when the user asks to analyze a protein variant, ask a research question, get AI analysis of a mutation, or query Clarity's aggregated data sources. Requires CLARITY_WRITE_API_KEY. Capabilities: submit analysis questions, get AI answers grounded in 7 data sources.
clarity-clinical
Query clinical variant data from ClinVar and gnomAD via Clarity Protocol. Use when the user asks about ClinVar classification, clinical significance, pathogenicity, gnomAD frequency, population genetics, or clinical data for gene. Capabilities: search clinical variants by gene, get detailed variant annotations.
clarity-research
Search protein folding research data from Clarity Protocol. Use when the user asks to search variants, query protein research, find fold results, or explore disease-specific protein data. Capabilities: list variants by disease or protein name, get API info.